PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G207900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 252aa    MW: 28219.5 Da    PI: 4.9245
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G207900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-5461371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePwdL  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd
  Brast05G207900.1.p   6 LPPGFRFHPTDEELVNYYLKRKIHGQHIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKD 95 
                         79****************************.99**************84335556888********************************* PP

                 NAM  90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v+++   + +++g+kktLv+y+grap+g++tdWvmheyrl
  Brast05G207900.1.p  96 RRVMQHhggGVRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 137
                         *****97665667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-624162IPR003441NAC domain
PROSITE profilePS5100560.3236161IPR003441NAC domain
PfamPF023653.1E-307137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG QHIELDIIPE VDLYKCEPWD LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVMQ HHGGGVRAIG MKKTLVYYRG  120
RAPQGVRTDW VMHEYRLDDK QDSDDAMAIQ DTYALCRVFK KNAICAEVDE LQEGQCSMAL  180
LEGACRQLLA SGSTSQEYQT PSPDVPVGST SGGGDADADD DKDDSWMQFI SDDAWCSSAA  240
EESTSCVALA G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-53216211169Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576809.11e-172PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI52e-86NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A0Q3EV661e-172A0A0Q3EV66_BRADI; Uncharacterized protein
STRINGMLOC_37843.11e-152(Hordeum vulgare)
STRINGORGLA09G0151700.11e-151(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-120NAC domain containing protein 57